01
Fixed protocols
Define the sequence of operations before results are interpreted.
BioWFReproducibility
Reproducible scientific workflows.
BioWF is the future research layer for composing scientific operations into complete, versioned and auditable studies.
Why workflows matter
A correct tool call is only one part of a scientific result.
A study also depends on the data version, configuration, software environment, sequence of operations, random seeds and evidence generated along the way.
02
Versioned execution
Record code, configuration, model and data provenance for each run.
03
Comparable experiments
Make repeated runs and baseline comparisons explicit rather than informal.
04
Auditable evidence
Keep artifacts and metrics connected to the workflow that produced them.
Workflow structure
A study can be represented as explicit stages.
The intended workflow layer describes how scientific operations can be composed. It does not claim that a general workflow engine is already implemented.
01
Define
State the scientific question, inputs and evaluation requirements.
02
Prepare
Resolve datasets, versions, metadata and required inputs.
03
Configure
Freeze model, software, parameters and execution settings.
04
Execute
Run the selected scientific operations in their declared environment.
05
Validate
Check outputs against the predefined protocol and quality rules.
06
Record
Preserve results, artifacts and provenance for later inspection.
Future direction
A reusable workflow engine for the wider bioimaging ecosystem.
Planned
General workflow composition across multiple open bioimaging applications is a future development direction. It will be presented as implemented only after it exists and is benchmarked.
See the interoperability layer